TF_ChIP-seq_ENCSR970OJY
TF_ChIP-seq ENCSR970OJY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3" and target="TCF3"]
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| Id: | TF_ChIP-seq/ENCSR970OJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR970OJY [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3" and target="TCF3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN470RFQ|/analyses/ENCAN470RFQ/} has in progress subobject document {b052f2ad-a572-4137-a9cd-3e35695d2337|/documents/b052f2ad-a572-4137-a9cd-3e35695d2337/} audit_internal_action: Released analysis {ENCAN470RFQ|/analyses/ENCAN470RFQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF220SAF|/files/ENCFF220SAF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF220SAF|/files/ENCFF220SAF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF735MDE|/files/ENCFF735MDE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF735MDE|/files/ENCFF735MDE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR970OJY | float |
TF_ChIP-seq_ENCSR970OJY |
TF_ChIP-seq ENCSR970OJY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3" and target="TCF3"]
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[7.84, 758] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF773RNU.bed.gz | 541.63 KB | b3ca8b482f3218d3a061a2153aa5e1df |
| ENCFF773RNU.bed.gz.dvc | 100.0 B | 410d1f6bcf3668550aaf0e28f4d11f80 |
| ENCFF773RNU.tabix.bed.gz | 405.04 KB | 1548dc7e411e218dc79396515546b36d |
| ENCFF773RNU.tabix.bed.gz.dvc | 106.0 B | 523bfdf384188451e56eb473ee578d82 |
| ENCFF773RNU.tabix.bed.gz.tbi | 188.43 KB | c728609a7330308ecee813c20ce0cedd |
| ENCFF773RNU.tabix.bed.gz.tbi.dvc | 110.0 B | 14d3ebf9b556d07df0b8761975c7985e |
| genomic_resource.yaml | 4.43 KB | 0589fd24f738d5f309169739cf6ad388 |
| genomic_resource_original.yaml | 4.27 KB | 162f371bb91206efdc0ecb36a2d4c013 |
| statistics/ |