TF_ChIP-seq_ENCSR968QDP
TF_ChIP-seq ENCSR968QDP [biosample_summary="Homo sapiens HepG2" and target="SMARCE1"]
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| Id: | TF_ChIP-seq/ENCSR968QDP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR968QDP [biosamplesummary="Homo sapiens HepG2" and target="SMARCE1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF210HAA|/files/ENCFF210HAA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN320TQM|/analyses/ENCAN320TQM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF210HAA|/files/ENCFF210HAA/}, {ENCFF223VHR|/files/ENCFF223VHR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency ratio of 2.30. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF142ECX|/files/ENCFF142ECX/}, {ENCFF005KDP|/files/ENCFF005KDP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency ratio of 2.30. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR968QDP | float |
TF_ChIP-seq_ENCSR968QDP |
TF_ChIP-seq ENCSR968QDP [biosample_summary="Homo sapiens HepG2" and target="SMARCE1"]
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[13, 4.17e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF210HAA.bed.gz | 26.1 KB | 58276e6a4bbfd9e3ca8e7a07240c6f81 |
| ENCFF210HAA.bed.gz.dvc | 99.0 B | 478adba937b2f0f9eeb6bc85e1e7f67e |
| ENCFF210HAA.tabix.bed.gz | 16.59 KB | ea8280e7d4a019d7e08c42e7d096a2a4 |
| ENCFF210HAA.tabix.bed.gz.dvc | 105.0 B | 66eeee2e7e21eee3120cb6aae1475272 |
| ENCFF210HAA.tabix.bed.gz.tbi | 18.02 KB | b056465aabf6f9678cbaf148ff5b61f6 |
| ENCFF210HAA.tabix.bed.gz.tbi.dvc | 109.0 B | febf69544adfef95c0bac36a71a80703 |
| genomic_resource.yaml | 2.67 KB | e6f6b9e854887001de7a20cc33b8925f |
| genomic_resource_original.yaml | 2.57 KB | c854cdafa0f06b01ec2fd179da896737 |
| statistics/ |