TF_ChIP-seq_ENCSR964ZJC
TF_ChIP-seq ENCSR964ZJC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547" and target="ZNF547"]
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| Id: | TF_ChIP-seq/ENCSR964ZJC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR964ZJC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547" and target="ZNF547"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN383QOT|/analyses/ENCAN383QOT/} has in progress subobject document {a2b96ded-0f88-4d5f-bb31-98c155da5617|/documents/a2b96ded-0f88-4d5f-bb31-98c155da5617/} audit_internal_action: Released analysis {ENCAN383QOT|/analyses/ENCAN383QOT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF281ZIF|/files/ENCFF281ZIF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF281ZIF|/files/ENCFF281ZIF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.08. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF300XEW|/files/ENCFF300XEW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF300XEW|/files/ENCFF300XEW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.03. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR964ZJC | float |
TF_ChIP-seq_ENCSR964ZJC |
TF_ChIP-seq ENCSR964ZJC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547" and target="ZNF547"]
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[15.2, 574] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF825WJM.bed.gz | 351.91 KB | 1e5180c0e380d1cb9bb8eb67675cdb8d |
| ENCFF825WJM.bed.gz.dvc | 100.0 B | cf5ec9ab2607db4c458d684db26e3830 |
| ENCFF825WJM.tabix.bed.gz | 277.94 KB | dba278cfabd5991d713fa17cc4024e0f |
| ENCFF825WJM.tabix.bed.gz.dvc | 106.0 B | f1fa2a9b3ebf569f08cde3905e6f3bcb |
| ENCFF825WJM.tabix.bed.gz.tbi | 103.73 KB | 3445c63c9dcb6affba4277e9491079a3 |
| ENCFF825WJM.tabix.bed.gz.tbi.dvc | 110.0 B | 5f4d9ef654f5878dfbff6c93f256cfbc |
| genomic_resource.yaml | 4.45 KB | c30fb3038ff2e0cd60a296fd3ed54ef2 |
| genomic_resource_original.yaml | 4.29 KB | 722f1420b7bc8a8e81f4d96155779815 |
| statistics/ |