TF_ChIP-seq_ENCSR963CCJ
TF_ChIP-seq ENCSR963CCJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B" and target="ARID4B"]
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| Id: | TF_ChIP-seq/ENCSR963CCJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR963CCJ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B" and target="ARID4B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN385OXE|/analyses/ENCAN385OXE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF843URG|/files/ENCFF843URG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF843URG|/files/ENCFF843URG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.66. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF413VSG|/files/ENCFF413VSG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.52 and a self consistency ratio of 3.55. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR963CCJ | float |
TF_ChIP-seq_ENCSR963CCJ |
TF_ChIP-seq ENCSR963CCJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B" and target="ARID4B"]
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[9.06, 601] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF413VSG.bed.gz | 253.28 KB | 45364be7058e112e1909766c0c380de2 |
| ENCFF413VSG.bed.gz.dvc | 100.0 B | c66b2ae8123d99310be00d6d9a1ec861 |
| ENCFF413VSG.tabix.bed.gz | 191.66 KB | 34a578531ea4528f679473cb9aea07b1 |
| ENCFF413VSG.tabix.bed.gz.dvc | 106.0 B | 0372ddf5c32e697c50b4e85b5e9dbed7 |
| ENCFF413VSG.tabix.bed.gz.tbi | 91.18 KB | 14e77e8f86baacf701f1dc8f00037c6d |
| ENCFF413VSG.tabix.bed.gz.tbi.dvc | 109.0 B | 412161b42e6e81b0baa3fd58b6faef6d |
| genomic_resource.yaml | 3.49 KB | 6b9b2b9415e97e082b56edbb37ccdd6a |
| genomic_resource_original.yaml | 3.33 KB | 75716a40d6e596ed2406f0340cf15b41 |
| statistics/ |