TF_ChIP-seq_ENCSR962BEI
TF_ChIP-seq ENCSR962BEI [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21" and target="ZBTB21"]
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| Id: | TF_ChIP-seq/ENCSR962BEI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR962BEI [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21" and target="ZBTB21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN141MRP|/analyses/ENCAN141MRP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF942ZUN|/files/ENCFF942ZUN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF942ZUN|/files/ENCFF942ZUN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF678YDL|/files/ENCFF678YDL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF678YDL|/files/ENCFF678YDL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.06. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF248QLP|/files/ENCFF248QLP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.13 and a self consistency ratio of 2.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR962BEI | float |
TF_ChIP-seq_ENCSR962BEI |
TF_ChIP-seq ENCSR962BEI [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21" and target="ZBTB21"]
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[10.6, 656] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF248QLP.bed.gz | 135.09 KB | ed65fea03ae57f030871de06bb5bae3e |
| ENCFF248QLP.bed.gz.dvc | 100.0 B | 7324541d7c8b654fa86d90726290898f |
| ENCFF248QLP.tabix.bed.gz | 95.47 KB | c932d48e88fca98e52ed84243f7e3e40 |
| ENCFF248QLP.tabix.bed.gz.dvc | 105.0 B | 68d5a2fd337a0ad9ec826858a7ce431e |
| ENCFF248QLP.tabix.bed.gz.tbi | 60.85 KB | 81ec1c953463a1c2a4c06e1430e9752f |
| ENCFF248QLP.tabix.bed.gz.tbi.dvc | 109.0 B | d8d428cfd5bd1af58365940f7209d044 |
| genomic_resource.yaml | 4.76 KB | ad22be5ed2384de5e169e8673588e13c |
| genomic_resource_original.yaml | 4.59 KB | ba03f019c60bb150eb778c594f302cb2 |
| statistics/ |