TF_ChIP-seq_ENCSR961WLZ
TF_ChIP-seq ENCSR961WLZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5" and target="SOX5"]
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| Id: | TF_ChIP-seq/ENCSR961WLZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR961WLZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5" and target="SOX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SOX5 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN295TJN|/analyses/ENCAN295TJN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF703VBH|/files/ENCFF703VBH/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF299JTM|/files/ENCFF299JTM/}, {ENCFF703VBH|/files/ENCFF703VBH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.41 and a self consistency ratio of 2.98. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF173MFM|/files/ENCFF173MFM/}, {ENCFF731ORL|/files/ENCFF731ORL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.41 and a self consistency ratio of 2.98. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR961WLZ | float |
TF_ChIP-seq_ENCSR961WLZ |
TF_ChIP-seq ENCSR961WLZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5" and target="SOX5"]
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[8.64, 579] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF703VBH.bed.gz | 691.1 KB | 4d298c239646137f7678484c9d3d83fc |
| ENCFF703VBH.bed.gz.dvc | 100.0 B | 12d35ec86c9ba77c5ec0444365e4ef30 |
| ENCFF703VBH.tabix.bed.gz | 513.2 KB | 497742ac39465c6a583d8016f90e53d3 |
| ENCFF703VBH.tabix.bed.gz.dvc | 106.0 B | aab6b76f55622b9b584583cc3bbf2b22 |
| ENCFF703VBH.tabix.bed.gz.tbi | 211.22 KB | fb65efa8d765f7c56a0095001c2e54ec |
| ENCFF703VBH.tabix.bed.gz.tbi.dvc | 110.0 B | 7610cfc01614d8e2373bdc158d0d73e2 |
| genomic_resource.yaml | 2.98 KB | fd7af8da96d05905cc718ffb66d6d2de |
| genomic_resource_original.yaml | 2.82 KB | bfea7582b2c65b398943dc140fa7586a |
| statistics/ |