TF_ChIP-seq_ENCSR960ASR
TF_ChIP-seq ENCSR960ASR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6" and target="TIGD6"]
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| Id: | TF_ChIP-seq/ENCSR960ASR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR960ASR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6" and target="TIGD6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN300ILG|/analyses/ENCAN300ILG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN300ILG|/analyses/ENCAN300ILG/} has in progress subobject document {28e0c587-474c-4b23-884c-404e9430b548|/documents/28e0c587-474c-4b23-884c-404e9430b548/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF413CSU|/files/ENCFF413CSU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF413CSU|/files/ENCFF413CSU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.19. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF564UAL|/files/ENCFF564UAL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF564UAL|/files/ENCFF564UAL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR960ASR | float |
TF_ChIP-seq_ENCSR960ASR |
TF_ChIP-seq ENCSR960ASR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6" and target="TIGD6"]
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[11.1, 510] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF667FDX.bed.gz | 243.31 KB | b97797b40926e093963e79a9c869812d |
| ENCFF667FDX.bed.gz.dvc | 100.0 B | ba466c6032b5dcc861bab24a69e22877 |
| ENCFF667FDX.tabix.bed.gz | 196.46 KB | e958f76c312d224dbd0124528253177c |
| ENCFF667FDX.tabix.bed.gz.dvc | 106.0 B | 841a2de4bdd78646d2a05331ec4a1497 |
| ENCFF667FDX.tabix.bed.gz.tbi | 84.5 KB | cd9c84e19fc55bad1585502f2e6151c2 |
| ENCFF667FDX.tabix.bed.gz.tbi.dvc | 109.0 B | 485212ee9f53b36728bed7f71cfa8e15 |
| genomic_resource.yaml | 4.44 KB | 36d0f6cad7f9a3f495fc77bf9d210fb4 |
| genomic_resource_original.yaml | 4.28 KB | 5f676b881b3b05973144b54f01a1ef16 |
| statistics/ |