TF_ChIP-seq_ENCSR957LTN
TF_ChIP-seq ENCSR957LTN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146" and target="ZNF146"]
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| Id: | TF_ChIP-seq/ENCSR957LTN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR957LTN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146" and target="ZNF146"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN993XUG|/analyses/ENCAN993XUG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF688MBJ|/files/ENCFF688MBJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF688MBJ|/files/ENCFF688MBJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.25. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF159LUA|/files/ENCFF159LUA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF159LUA|/files/ENCFF159LUA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR957LTN | float |
TF_ChIP-seq_ENCSR957LTN |
TF_ChIP-seq ENCSR957LTN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146" and target="ZNF146"]
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[10.8, 686] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF624JML.bed.gz | 458.08 KB | 0e37b4e6bef4df7649a994935140985e |
| ENCFF624JML.bed.gz.dvc | 100.0 B | 2d163c745c5dbc05709e24b4b3c214b4 |
| ENCFF624JML.tabix.bed.gz | 338.09 KB | 567ae02a42fcc255f158929da2f7b5ba |
| ENCFF624JML.tabix.bed.gz.dvc | 106.0 B | 0da4c8cda98f5d167708c33f87016832 |
| ENCFF624JML.tabix.bed.gz.tbi | 185.62 KB | becda43b412785bc68adf43ec3c2642e |
| ENCFF624JML.tabix.bed.gz.tbi.dvc | 110.0 B | 672915b6bd702093c234a3cae131ca1e |
| genomic_resource.yaml | 4.24 KB | e299cfa316d35b3ba5569560637bf8cd |
| genomic_resource_original.yaml | 4.07 KB | a1a7a8ec4b8d41109d7aa25339b277ae |
| statistics/ |