TF_ChIP-seq_ENCSR957KYB
TF_ChIP-seq ENCSR957KYB [biosample_summary="Homo sapiens IMR-90" and target="BHLHE40"]
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| Id: | TF_ChIP-seq/ENCSR957KYB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR957KYB [biosamplesummary="Homo sapiens IMR-90" and target="BHLHE40"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF567GON|/files/ENCFF567GON/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN097PHU|/analyses/ENCAN097PHU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF953OAD|/files/ENCFF953OAD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18721488 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BHLHE40-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF953OAD|/files/ENCFF953OAD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF953OAD|/files/ENCFF953OAD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF551QAX|/files/ENCFF551QAX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF551QAX|/files/ENCFF551QAX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR957KYB | float |
TF_ChIP-seq_ENCSR957KYB |
TF_ChIP-seq ENCSR957KYB [biosample_summary="Homo sapiens IMR-90" and target="BHLHE40"]
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[5.1, 534] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF567GON.bed.gz | 458.92 KB | 775b7dbac18e40d372df304f3eef7204 |
| ENCFF567GON.bed.gz.dvc | 100.0 B | be33f93a95c4d6ce7a1e9bac8ff53e33 |
| ENCFF567GON.tabix.bed.gz | 350.48 KB | 3e55aedd4ce15e45d9a0622ff10f5e3f |
| ENCFF567GON.tabix.bed.gz.dvc | 106.0 B | aa95c935528835e6f3cd69a14c724452 |
| ENCFF567GON.tabix.bed.gz.tbi | 186.79 KB | dc83ca993d7900d600fcdd2736aabe67 |
| ENCFF567GON.tabix.bed.gz.tbi.dvc | 110.0 B | 9145fc4e6474c7a86b5c850fa2533cd8 |
| genomic_resource.yaml | 4.64 KB | 26a5890ad2d25d6194056548d089f120 |
| genomic_resource_original.yaml | 4.54 KB | 74ff0473e7cc2239cae7eb660b22d390 |
| statistics/ |