TF_ChIP-seq_ENCSR955LXM
TF_ChIP-seq ENCSR955LXM [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33" and target="ZBTB33"]
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| Id: | TF_ChIP-seq/ENCSR955LXM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR955LXM [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33" and target="ZBTB33"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN533UEL|/analyses/ENCAN533UEL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF112ECV|/files/ENCFF112ECV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF112ECV|/files/ENCFF112ECV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.40. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF035WDX|/files/ENCFF035WDX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF035WDX|/files/ENCFF035WDX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR955LXM | float |
TF_ChIP-seq_ENCSR955LXM |
TF_ChIP-seq ENCSR955LXM [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33" and target="ZBTB33"]
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[12.9, 911] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF763XBV.bed.gz | 639.36 KB | b24df0ea04ee9cacc9eeb47ebc740c48 |
| ENCFF763XBV.bed.gz.dvc | 100.0 B | 4edd3d563ce5a74cf093affe70c72a74 |
| ENCFF763XBV.tabix.bed.gz | 479.79 KB | d78ba5596fb49b0a53b4fbc4f53bb872 |
| ENCFF763XBV.tabix.bed.gz.dvc | 106.0 B | 158ed0987634bae0abf32fe58669583e |
| ENCFF763XBV.tabix.bed.gz.tbi | 159.15 KB | 8c19f395106712f42531d59292c2e655 |
| ENCFF763XBV.tabix.bed.gz.tbi.dvc | 110.0 B | e96d99dce02baab6d1bc52c32bfb55e4 |
| genomic_resource.yaml | 4.24 KB | fdb4955d6963f25908a25c80e81aaec0 |
| genomic_resource_original.yaml | 4.07 KB | fe68f7d0eac5cb0d0bb060bc3e0b6822 |
| statistics/ |