TF_ChIP-seq_ENCSR955BIB
TF_ChIP-seq ENCSR955BIB [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR955BIB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR955BIB [biosamplesummary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN984QIT|/analyses/ENCAN984QIT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF336YLG|/files/ENCFF336YLG/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF336YLG|/files/ENCFF336YLG/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.61. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR955BIB | float |
TF_ChIP-seq_ENCSR955BIB |
TF_ChIP-seq ENCSR955BIB [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="CTCF"]
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[8.31, 3.14e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF520JZM.bed.gz | 684.34 KB | 12909e8208754d0c074e96cab115db3e |
| ENCFF520JZM.bed.gz.dvc | 100.0 B | 14bc437c6e06b28601687ab628eaffa3 |
| ENCFF520JZM.tabix.bed.gz | 497.4 KB | 0613851aadeab03a1dad4e4fb7b20e8a |
| ENCFF520JZM.tabix.bed.gz.dvc | 106.0 B | 1234f236149afbbbf7a2322f68fc9ad9 |
| ENCFF520JZM.tabix.bed.gz.tbi | 260.8 KB | 2131dda7f2b8dc1bed62cbc7adb12fe4 |
| ENCFF520JZM.tabix.bed.gz.tbi.dvc | 110.0 B | fab608c869e64695258f6dd062346fd8 |
| genomic_resource.yaml | 2.75 KB | 62051ff28dd1b64cbe8a556b842d20df |
| genomic_resource_original.yaml | 2.62 KB | aad77e0fa3d267b103f03796489abcf1 |
| statistics/ |