TF_ChIP-seq_ENCSR954WVZ
TF_ChIP-seq ENCSR954WVZ [biosample_summary="Homo sapiens MCF-7" and target="ESRRA"]
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| Id: | TF_ChIP-seq/ENCSR954WVZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR954WVZ [biosamplesummary="Homo sapiens MCF-7" and target="ESRRA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF541DRZ|/files/ENCFF541DRZ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN640ZGH|/analyses/ENCAN640ZGH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF042XMV|/files/ENCFF042XMV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF042XMV|/files/ENCFF042XMV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR954WVZ | float |
TF_ChIP-seq_ENCSR954WVZ |
TF_ChIP-seq ENCSR954WVZ [biosample_summary="Homo sapiens MCF-7" and target="ESRRA"]
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[15.5, 3.2e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF541DRZ.bed.gz | 209.41 KB | a9e1011101629a43596645633534b80d |
| ENCFF541DRZ.bed.gz.dvc | 100.0 B | 373bf0a904519ea1119f78abf1f60a5a |
| ENCFF541DRZ.tabix.bed.gz | 141.33 KB | e7ddf8b8e0c937dd4ef691c96933c664 |
| ENCFF541DRZ.tabix.bed.gz.dvc | 106.0 B | 001f33c8812845e7414ee6e189c04946 |
| ENCFF541DRZ.tabix.bed.gz.tbi | 87.57 KB | 69c705bc8cda0faede8ecade9a31bea5 |
| ENCFF541DRZ.tabix.bed.gz.tbi.dvc | 109.0 B | 8f3df7be62917760434c042d79496f47 |
| genomic_resource.yaml | 2.83 KB | 4818e5a5673e9fc710bc4423e7849269 |
| genomic_resource_original.yaml | 2.74 KB | cf37a78ac51a14ff6517bcf1006bbfbd |
| statistics/ |