TF_ChIP-seq_ENCSR953KEY
TF_ChIP-seq ENCSR953KEY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3" and target="TFE3"]
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| Id: | TF_ChIP-seq/ENCSR953KEY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR953KEY [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3" and target="TFE3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TFE3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN483AMU|/analyses/ENCAN483AMU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN483AMU|/analyses/ENCAN483AMU/} has in progress subobject document {37499e6a-4a16-4329-b31b-0d579e6ce275|/documents/37499e6a-4a16-4329-b31b-0d579e6ce275/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF152QJV|/files/ENCFF152QJV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF152QJV|/files/ENCFF152QJV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF634YLL|/files/ENCFF634YLL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF634YLL|/files/ENCFF634YLL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.99. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR953KEY | float |
TF_ChIP-seq_ENCSR953KEY |
TF_ChIP-seq ENCSR953KEY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3" and target="TFE3"]
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[16, 8.11e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF592NJN.bed.gz | 387.2 KB | 87424d6f3ff19415f64f25403fe9ffd2 |
| ENCFF592NJN.bed.gz.dvc | 100.0 B | ea4678fe3dedc685f83c5b963bcbf58c |
| ENCFF592NJN.tabix.bed.gz | 271.87 KB | 77dd90976871d3d080904f6dc4531ab9 |
| ENCFF592NJN.tabix.bed.gz.dvc | 106.0 B | 24f4600df0f655647f030d50f205d38b |
| ENCFF592NJN.tabix.bed.gz.tbi | 175.3 KB | f8ea46ef6b5c3e0e82a4bb29ebd2f345 |
| ENCFF592NJN.tabix.bed.gz.tbi.dvc | 110.0 B | fe7f15865879f5b664a1935bc472b0cb |
| genomic_resource.yaml | 4.43 KB | 8af972c4be87234d9241ba37ccc0a4b9 |
| genomic_resource_original.yaml | 4.27 KB | c1f77bcc6babf3a839eb802a0aa01edd |
| statistics/ |