TF_ChIP-seq_ENCSR953DVM
TF_ChIP-seq ENCSR953DVM [biosample_summary="Homo sapiens K562" and target="E2F8"]
×
| Id: | TF_ChIP-seq/ENCSR953DVM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR953DVM [biosamplesummary="Homo sapiens K562" and target="E2F8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN699CAK|/analyses/ENCAN699CAK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF019NMV|/files/ENCFF019NMV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18380626 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F8-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF019NMV|/files/ENCFF019NMV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF019NMV|/files/ENCFF019NMV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.83. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF534OTQ|/files/ENCFF534OTQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF534OTQ|/files/ENCFF534OTQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.45. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR953DVM | float |
TF_ChIP-seq_ENCSR953DVM |
TF_ChIP-seq ENCSR953DVM [biosample_summary="Homo sapiens K562" and target="E2F8"]
|
|
[37.1, 8.37e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF925DJG.bed.gz | 194.66 KB | a54bfc70ca37fae47890b441013320dd |
| ENCFF925DJG.bed.gz.dvc | 100.0 B | ed295cbbeb662bb8d328f5ae99687cc0 |
| ENCFF925DJG.tabix.bed.gz | 161.82 KB | 46edb7184473443ed1efa8bfc32ba8ca |
| ENCFF925DJG.tabix.bed.gz.dvc | 106.0 B | a50b9329dfce03b9d9e87253929e3698 |
| ENCFF925DJG.tabix.bed.gz.tbi | 84.97 KB | 891dc8f3b1b13c3034d735b50cae4b12 |
| ENCFF925DJG.tabix.bed.gz.tbi.dvc | 109.0 B | b648dbbca8c9816b12460a3061aff769 |
| genomic_resource.yaml | 4.97 KB | 1f50d77f4cb3d1ab482f55e49f9ec7b8 |
| genomic_resource_original.yaml | 4.88 KB | dec9ab2e96f4cea742537a2da58ebeb1 |
| statistics/ |