| Id: | TF_ChIP-seq/ENCSR949NVY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR949NVY [biosamplesummary="Homo sapiens K562" and target="ZNF639"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN797ADT|/analyses/ENCAN797ADT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN797ADT|/analyses/ENCAN797ADT/} has in progress subobject document {4ee9a55f-8441-47eb-bb22-83567ce58351|/documents/4ee9a55f-8441-47eb-bb22-83567ce58351/} audit_warning: Processed alignments file {ENCFF215SCF|/files/ENCFF215SCF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18266543 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF639-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF669VJB|/files/ENCFF669VJB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 2.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR949NVY | float |
TF_ChIP-seq_ENCSR949NVY |
TF_ChIP-seq ENCSR949NVY [biosample_summary="Homo sapiens K562" and target="ZNF639"]
|
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[10.8, 2.14e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669VJB.bed.gz | 284.02 KB | 89d67dfc9f1fc7c57640553f2b93a7d2 |
| ENCFF669VJB.bed.gz.dvc | 100.0 B | 7ab208a3fc86fa6eea861a8219da34a8 |
| ENCFF669VJB.tabix.bed.gz | 200.84 KB | 0396566009a676f9bf7e27ae4a98a2a6 |
| ENCFF669VJB.tabix.bed.gz.dvc | 106.0 B | 3afd5388691c771bb16cb9497e718cdd |
| ENCFF669VJB.tabix.bed.gz.tbi | 104.65 KB | 0faa6be76b66629d02e2bc17bcfa74f1 |
| ENCFF669VJB.tabix.bed.gz.tbi.dvc | 110.0 B | 82dc9062ccd18923b969da4ed48c6466 |
| genomic_resource.yaml | 3.15 KB | 4f042d409125a938bd9268e7db3233aa |
| genomic_resource_original.yaml | 3.05 KB | c7119fb92dbb75dbfb0fa323fd9e177f |
| statistics/ |