TF_ChIP-seq_ENCSR949IWY
TF_ChIP-seq ENCSR949IWY [biosample_summary="Homo sapiens MCF-7" and target="PAX8"]
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| Id: | TF_ChIP-seq/ENCSR949IWY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR949IWY [biosamplesummary="Homo sapiens MCF-7" and target="PAX8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF473UHQ|/files/ENCFF473UHQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN842RHV|/analyses/ENCAN842RHV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF140JDN|/files/ENCFF140JDN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF140JDN|/files/ENCFF140JDN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF219NOE|/files/ENCFF219NOE/}, {ENCFF270BJM|/files/ENCFF270BJM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.13 and a self consistency ratio of 1.88. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF165MPT|/files/ENCFF165MPT/}, {ENCFF473UHQ|/files/ENCFF473UHQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.13 and a self consistency ratio of 1.88. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR949IWY | float |
TF_ChIP-seq_ENCSR949IWY |
TF_ChIP-seq ENCSR949IWY [biosample_summary="Homo sapiens MCF-7" and target="PAX8"]
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[14.6, 1.91e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF473UHQ.bed.gz | 50.36 KB | 2823bce409a0db45f0bd3aa24652988c |
| ENCFF473UHQ.bed.gz.dvc | 99.0 B | 0933d1927daff182dda1b29a9e46ce38 |
| ENCFF473UHQ.tabix.bed.gz | 33.54 KB | 2f116d7e62ad1a23835c019888797dc4 |
| ENCFF473UHQ.tabix.bed.gz.dvc | 105.0 B | 6a443720ef364477ed1628a56f4c8eaa |
| ENCFF473UHQ.tabix.bed.gz.tbi | 27.09 KB | cb51a73a225c76792dfd2797ba779c51 |
| ENCFF473UHQ.tabix.bed.gz.tbi.dvc | 109.0 B | 96a83acb0d13d3b70853ba6c11875511 |
| genomic_resource.yaml | 3.96 KB | ed3a197f4b2101b3d131820e81cd8fb5 |
| genomic_resource_original.yaml | 3.87 KB | 8817136cfc6431eb7afe288be1e83e3d |
| statistics/ |