TF_ChIP-seq_ENCSR947PJZ
TF_ChIP-seq ENCSR947PJZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1" and target="HIVEP1"]
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| Id: | TF_ChIP-seq/ENCSR947PJZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR947PJZ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1" and target="HIVEP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN716XAK|/analyses/ENCAN716XAK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN716XAK|/analyses/ENCAN716XAK/} has in progress subobject document {0a653e55-4731-4d6f-bf0d-7bd3ba036408|/documents/0a653e55-4731-4d6f-bf0d-7bd3ba036408/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF044RTW|/files/ENCFF044RTW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF044RTW|/files/ENCFF044RTW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF038TKC|/files/ENCFF038TKC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF038TKC|/files/ENCFF038TKC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR947PJZ | float |
TF_ChIP-seq_ENCSR947PJZ |
TF_ChIP-seq ENCSR947PJZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1" and target="HIVEP1"]
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[16, 1.37e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF449JMB.bed.gz | 84.17 KB | b2378c251214c4eb496cd4ae3cc1edd7 |
| ENCFF449JMB.bed.gz.dvc | 99.0 B | 6730729b3719c3cb926ebfc0bcf0268d |
| ENCFF449JMB.tabix.bed.gz | 53.38 KB | 3e10c4b584cdecd6252e117cee81f778 |
| ENCFF449JMB.tabix.bed.gz.dvc | 105.0 B | a334fbc93efa192876a951d3abe64fc2 |
| ENCFF449JMB.tabix.bed.gz.tbi | 39.61 KB | eb4464fc565235964ca94628a4ce86dc |
| ENCFF449JMB.tabix.bed.gz.tbi.dvc | 109.0 B | 389d284a4e965aca25341e21b8079612 |
| genomic_resource.yaml | 4.45 KB | 870fe8986ea9f3abf289ffc7721f9870 |
| genomic_resource_original.yaml | 4.28 KB | 8c3b0f2012b2ec8836c1aebf501e8034 |
| statistics/ |