TF_ChIP-seq_ENCSR946WBN
TF_ChIP-seq ENCSR946WBN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"]
×
| Id: | TF_ChIP-seq/ENCSR946WBN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR946WBN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens JUN output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN210PYD|/analyses/ENCAN210PYD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF620LMU|/files/ENCFF620LMU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF620LMU|/files/ENCFF620LMU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF545EZW|/files/ENCFF545EZW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF545EZW|/files/ENCFF545EZW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.89. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF865UPM|/files/ENCFF865UPM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.52 and a self consistency ratio of 4.12. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR946WBN | float |
TF_ChIP-seq_ENCSR946WBN |
TF_ChIP-seq ENCSR946WBN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"]
|
|
[11, 330] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF865UPM.bed.gz | 130.27 KB | 1504363b2971689d5806367e9be0f4a5 |
| ENCFF865UPM.bed.gz.dvc | 100.0 B | 5102e95090ac07c3e4215c12998ec094 |
| ENCFF865UPM.tabix.bed.gz | 94.02 KB | 25128368a65f709bbf2e8c1d12ee2c4f |
| ENCFF865UPM.tabix.bed.gz.dvc | 105.0 B | c4989ecc14e22a336a83fbe95d52e94b |
| ENCFF865UPM.tabix.bed.gz.tbi | 50.74 KB | 90400fd26c1f4d0551b5e0092774df37 |
| ENCFF865UPM.tabix.bed.gz.tbi.dvc | 109.0 B | 87e0206b127ae1e91509c0cec417b4e8 |
| genomic_resource.yaml | 4.73 KB | 2ad62a4c999ba75b586ab4a656082800 |
| genomic_resource_original.yaml | 4.58 KB | 199e42434e929b8714552613bb513e82 |
| statistics/ |