TF_ChIP-seq_ENCSR946RZN
TF_ChIP-seq ENCSR946RZN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2" and target="SP2"]
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| Id: | TF_ChIP-seq/ENCSR946RZN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR946RZN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2" and target="SP2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SP2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN639KDB|/analyses/ENCAN639KDB/} has in progress subobject document {45b96fa3-e5f1-4463-803b-49db04376f60|/documents/45b96fa3-e5f1-4463-803b-49db04376f60/} audit_internal_action: Released analysis {ENCAN639KDB|/analyses/ENCAN639KDB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF797BAN|/files/ENCFF797BAN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF797BAN|/files/ENCFF797BAN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF938KMZ|/files/ENCFF938KMZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF938KMZ|/files/ENCFF938KMZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR946RZN | float |
TF_ChIP-seq_ENCSR946RZN |
TF_ChIP-seq ENCSR946RZN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2" and target="SP2"]
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[9.69, 845] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF480YAW.bed.gz | 200.9 KB | d3abb79627fa320476d04bf9caf037c6 |
| ENCFF480YAW.bed.gz.dvc | 100.0 B | 3d37fc9df21b6475e9a827735ca1e4b9 |
| ENCFF480YAW.tabix.bed.gz | 150.51 KB | 395da201b81cf13c0f4b94f57cae0a79 |
| ENCFF480YAW.tabix.bed.gz.dvc | 106.0 B | cfcac77db71e735201f833964056c0e5 |
| ENCFF480YAW.tabix.bed.gz.tbi | 76.81 KB | 79116c57d7780774931360dca43e650c |
| ENCFF480YAW.tabix.bed.gz.tbi.dvc | 109.0 B | 5db96ad4b05ac5816aea5d078113d80e |
| genomic_resource.yaml | 4.43 KB | 64ad7d1b1be3ea9c74d1632e32d68673 |
| genomic_resource_original.yaml | 4.27 KB | e005ed58c2ac53d44225ee92b477f253 |
| statistics/ |