TF_ChIP-seq_ENCSR946PKH
TF_ChIP-seq ENCSR946PKH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678" and target="ZNF678"]
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| Id: | TF_ChIP-seq/ENCSR946PKH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR946PKH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678" and target="ZNF678"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN984KEN|/analyses/ENCAN984KEN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN984KEN|/analyses/ENCAN984KEN/} has in progress subobject document {fa927f7b-dad9-4dd3-8eb3-2e6a16ac815d|/documents/fa927f7b-dad9-4dd3-8eb3-2e6a16ac815d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF280UZR|/files/ENCFF280UZR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF280UZR|/files/ENCFF280UZR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.73. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF730XPJ|/files/ENCFF730XPJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF730XPJ|/files/ENCFF730XPJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR946PKH | float |
TF_ChIP-seq_ENCSR946PKH |
TF_ChIP-seq ENCSR946PKH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678" and target="ZNF678"]
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[9.5, 448] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF678IWM.bed.gz | 143.35 KB | b4fb060dde1a90427fe1b9ff62a867b7 |
| ENCFF678IWM.bed.gz.dvc | 100.0 B | 2a0595ff1d082bbe10ef683f47977908 |
| ENCFF678IWM.tabix.bed.gz | 108.98 KB | 1eb8c11b75b80fe25e989dd1fcd70429 |
| ENCFF678IWM.tabix.bed.gz.dvc | 106.0 B | a26b9521f9cc8a5ebfde4bc9c4657550 |
| ENCFF678IWM.tabix.bed.gz.tbi | 55.15 KB | 03a97897c86869e1ce06a21aa0a6ec8a |
| ENCFF678IWM.tabix.bed.gz.tbi.dvc | 109.0 B | 4ae0081ddf9ed44aaec473f9d4f01b36 |
| genomic_resource.yaml | 4.45 KB | 129ea1f49cd2ed343e62400affbc5b81 |
| genomic_resource_original.yaml | 4.29 KB | 4dd4f881b1d0c7198db09b28602d8711 |
| statistics/ |