TF_ChIP-seq_ENCSR946BKU
TF_ChIP-seq ENCSR946BKU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2" and target="NR1H2"]
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| Id: | TF_ChIP-seq/ENCSR946BKU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR946BKU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2" and target="NR1H2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN890HON|/analyses/ENCAN890HON/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF174UOC|/files/ENCFF174UOC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 19843733 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR1H2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF216ISR|/files/ENCFF216ISR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.45 and a self consistency ratio of 3.31. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR946BKU | float |
TF_ChIP-seq_ENCSR946BKU |
TF_ChIP-seq ENCSR946BKU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2" and target="NR1H2"]
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[7.71, 328] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF216ISR.bed.gz | 89.65 KB | 45be6b90641d42df499265e5e49827b2 |
| ENCFF216ISR.bed.gz.dvc | 99.0 B | 89cae7ad95919a9b8de47d04c3f82805 |
| ENCFF216ISR.tabix.bed.gz | 64.02 KB | f13f80bb9f19233a4a92e4db8d1c8658 |
| ENCFF216ISR.tabix.bed.gz.dvc | 105.0 B | 54eb58f57ba675453d77e5d40010b246 |
| ENCFF216ISR.tabix.bed.gz.tbi | 40.03 KB | ad7c9b35ed8bfe1cc92e33a0a40eece9 |
| ENCFF216ISR.tabix.bed.gz.tbi.dvc | 109.0 B | 689092535595e7d40bd4b73156612bc3 |
| genomic_resource.yaml | 2.7 KB | fb9c9fe4d0e05313e4a77d76eb8fcbb6 |
| genomic_resource_original.yaml | 2.54 KB | 799df6b0c651727a8eb77008198aadae |
| statistics/ |