TF_ChIP-seq_ENCSR945QEW
TF_ChIP-seq ENCSR945QEW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121" and target="ZNF121"]
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| Id: | TF_ChIP-seq/ENCSR945QEW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR945QEW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121" and target="ZNF121"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN375JRU|/analyses/ENCAN375JRU/} has in progress subobject document {8cb174ce-88f7-47d6-a30e-33dd3ed536e1|/documents/8cb174ce-88f7-47d6-a30e-33dd3ed536e1/} audit_internal_action: Released analysis {ENCAN375JRU|/analyses/ENCAN375JRU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF162WIP|/files/ENCFF162WIP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF162WIP|/files/ENCFF162WIP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF223UEQ|/files/ENCFF223UEQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF223UEQ|/files/ENCFF223UEQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR945QEW | float |
TF_ChIP-seq_ENCSR945QEW |
TF_ChIP-seq ENCSR945QEW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121" and target="ZNF121"]
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[8.88, 791] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF604THW.bed.gz | 575.63 KB | b31422c5e69665fd6198fc019db59055 |
| ENCFF604THW.bed.gz.dvc | 100.0 B | bb90be296fa8a910c6afe1af9c896cb8 |
| ENCFF604THW.tabix.bed.gz | 426.24 KB | 321ac20666ea388a30536b6393eee2b7 |
| ENCFF604THW.tabix.bed.gz.dvc | 106.0 B | 8844da35895e4d1a5bbf70f472c8c9dd |
| ENCFF604THW.tabix.bed.gz.tbi | 167.02 KB | 347307776254518aca26bb0be1b853b2 |
| ENCFF604THW.tabix.bed.gz.tbi.dvc | 110.0 B | 4e4ef419ab1d5d2bb3f8566695338be6 |
| genomic_resource.yaml | 4.45 KB | b9adc424014d06e01e36363b7e49aef0 |
| genomic_resource_original.yaml | 4.29 KB | 647789d369aeeb98fe79e47b39319e14 |
| statistics/ |