TF_ChIP-seq_ENCSR945NFL
TF_ChIP-seq ENCSR945NFL [biosample_summary="Homo sapiens SK-N-SH" and target="USF2"]
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| Id: | TF_ChIP-seq/ENCSR945NFL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR945NFL [biosamplesummary="Homo sapiens SK-N-SH" and target="USF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN643XBZ|/analyses/ENCAN643XBZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF261PAC|/files/ENCFF261PAC/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF423JON|/files/ENCFF423JON/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17995839 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF496YWT|/files/ENCFF496YWT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16109007 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF708QCZ|/files/ENCFF708QCZ/}, {ENCFF261PAC|/files/ENCFF261PAC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.71 and a self consistency ratio of 3.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF327XBJ|/files/ENCFF327XBJ/}, {ENCFF061GVV|/files/ENCFF061GVV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.71 and a self consistency ratio of 3.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR945NFL | float |
TF_ChIP-seq_ENCSR945NFL |
TF_ChIP-seq ENCSR945NFL [biosample_summary="Homo sapiens SK-N-SH" and target="USF2"]
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[14.9, 514] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF261PAC.bed.gz | 18.94 KB | af2dc72aff571e1c5f08b04b17140298 |
| ENCFF261PAC.bed.gz.dvc | 99.0 B | e527e7010bae2dcb5c89f60b91ce1090 |
| ENCFF261PAC.tabix.bed.gz | 13.06 KB | f5623ecf728f5ca0db2ceaa60b9d673a |
| ENCFF261PAC.tabix.bed.gz.dvc | 105.0 B | 260f65e94128bc9263955bbf2b72e27f |
| ENCFF261PAC.tabix.bed.gz.tbi | 15.89 KB | b3fece29b2527b9a4a637e4a8e1bf991 |
| ENCFF261PAC.tabix.bed.gz.tbi.dvc | 109.0 B | ab4fc51ae53e431314c9ee6653f0f6b2 |
| genomic_resource.yaml | 3.66 KB | 83eb9720e07b14ecfd9e83bdb159e2a6 |
| genomic_resource_original.yaml | 3.56 KB | 18a894a409164c3d31aa03cf3a1c4609 |
| statistics/ |