TF_ChIP-seq_ENCSR943MQH
TF_ChIP-seq ENCSR943MQH [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33" and target="ZBTB33"]
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| Id: | TF_ChIP-seq/ENCSR943MQH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR943MQH [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33" and target="ZBTB33"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN640NWP|/analyses/ENCAN640NWP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF231XIJ|/files/ENCFF231XIJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 5.53 and a self consistency ratio of 5.25. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF050ZXM|/files/ENCFF050ZXM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 17971454 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF891TFC|/files/ENCFF891TFC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF891TFC|/files/ENCFF891TFC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.78. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF050ZXM|/files/ENCFF050ZXM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF050ZXM|/files/ENCFF050ZXM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR943MQH | float |
TF_ChIP-seq_ENCSR943MQH |
TF_ChIP-seq ENCSR943MQH [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33" and target="ZBTB33"]
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[7.21, 427] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF231XIJ.bed.gz | 98.47 KB | 2260813033c00afb9fb61621bf516200 |
| ENCFF231XIJ.bed.gz.dvc | 100.0 B | 503c6afb2e452060fb2cbad6249a92e1 |
| ENCFF231XIJ.tabix.bed.gz | 68.87 KB | 129c6d72d4c17b9cc9f30c33f1e9aa16 |
| ENCFF231XIJ.tabix.bed.gz.dvc | 105.0 B | 4c47b043c6b6308494a06969b572828e |
| ENCFF231XIJ.tabix.bed.gz.tbi | 46.45 KB | aa915ccf6a43424bd29a7bf200137f40 |
| ENCFF231XIJ.tabix.bed.gz.tbi.dvc | 109.0 B | e422ddcd6d2a34b06deb4e605fb355c5 |
| genomic_resource.yaml | 5.47 KB | b21d816457bf09f5c1559172def18653 |
| genomic_resource_original.yaml | 5.3 KB | 625ff09ec9f8c39378d21fc1dee31347 |
| statistics/ |