TF_ChIP-seq_ENCSR941WVJ
TF_ChIP-seq ENCSR941WVJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19" and target="FBXL19"]
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| Id: | TF_ChIP-seq/ENCSR941WVJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR941WVJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19" and target="FBXL19"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN618UWA|/analyses/ENCAN618UWA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF837QDM|/files/ENCFF837QDM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF837QDM|/files/ENCFF837QDM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.00. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF972FPI|/files/ENCFF972FPI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF972FPI|/files/ENCFF972FPI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.35. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR941WVJ | float |
TF_ChIP-seq_ENCSR941WVJ |
TF_ChIP-seq ENCSR941WVJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19" and target="FBXL19"]
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[9.58, 422] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF643XUN.bed.gz | 250.68 KB | 8993b6547cb9fa804dc17e2904be08c7 |
| ENCFF643XUN.bed.gz.dvc | 100.0 B | 7f2ae489e04eb6408ad6170d2fea0559 |
| ENCFF643XUN.tabix.bed.gz | 190.68 KB | 72bf693b601bbb7f3800d7cedb3f41ed |
| ENCFF643XUN.tabix.bed.gz.dvc | 106.0 B | 4988b60ef51e11d2861ca51d897841b3 |
| ENCFF643XUN.tabix.bed.gz.tbi | 88.46 KB | 45a871c23f0c49870e225dee8c912783 |
| ENCFF643XUN.tabix.bed.gz.tbi.dvc | 109.0 B | c4592ba1083a4cc60cc2786a26e213c6 |
| genomic_resource.yaml | 4.24 KB | 273e83948647a225caeb73b50cd844e1 |
| genomic_resource_original.yaml | 4.07 KB | 2fb45414c0bf3fc5fd8d05df982d0337 |
| statistics/ |