TF_ChIP-seq_ENCSR940PYZ
TF_ChIP-seq ENCSR940PYZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609" and target="ZNF609"]
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| Id: | TF_ChIP-seq/ENCSR940PYZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR940PYZ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609" and target="ZNF609"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN240ROA|/analyses/ENCAN240ROA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF623FBY|/files/ENCFF623FBY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF623FBY|/files/ENCFF623FBY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF336HBU|/files/ENCFF336HBU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF336HBU|/files/ENCFF336HBU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.88. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF824EJC|/files/ENCFF824EJC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency ratio of 3.41. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR940PYZ | float |
TF_ChIP-seq_ENCSR940PYZ |
TF_ChIP-seq ENCSR940PYZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609" and target="ZNF609"]
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[9.17, 242] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF824EJC.bed.gz | 98.46 KB | b8104e0f2b14d80630b729bfcb924121 |
| ENCFF824EJC.bed.gz.dvc | 100.0 B | efa918744dc8dea846c18a1d9ed6ab3a |
| ENCFF824EJC.tabix.bed.gz | 72.46 KB | bdbaf8494ee7adb05454d193b3ce285f |
| ENCFF824EJC.tabix.bed.gz.dvc | 105.0 B | 5e76a17d0874ef030ebe63912e4e8f84 |
| ENCFF824EJC.tabix.bed.gz.tbi | 40.93 KB | 5af32b9d84b8bf58f2b11ffd2297d178 |
| ENCFF824EJC.tabix.bed.gz.tbi.dvc | 109.0 B | a4c191b9cea875cb145b5ab7e7220191 |
| genomic_resource.yaml | 4.76 KB | df8986360c210bc0758ffb8bc1c719c4 |
| genomic_resource_original.yaml | 4.59 KB | b57ad79424dc4cec1043e627baa43134 |
| statistics/ |