TF_ChIP-seq_ENCSR940MHE
TF_ChIP-seq ENCSR940MHE [biosample_summary="Homo sapiens MCF-7" and target="MBD2"]
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| Id: | TF_ChIP-seq/ENCSR940MHE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR940MHE [biosamplesummary="Homo sapiens MCF-7" and target="MBD2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN866NPO|/analyses/ENCAN866NPO/} has in progress subobject document {bc1fb14a-aed4-480a-8d57-ca01796c5aa9|/documents/bc1fb14a-aed4-480a-8d57-ca01796c5aa9/} audit_internal_action: Released analysis {ENCAN866NPO|/analyses/ENCAN866NPO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF077JEQ|/files/ENCFF077JEQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19925147 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MBD2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF853ULZ|/files/ENCFF853ULZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.51 and a self consistency ratio of 4.16. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR940MHE | float |
TF_ChIP-seq_ENCSR940MHE |
TF_ChIP-seq ENCSR940MHE [biosample_summary="Homo sapiens MCF-7" and target="MBD2"]
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[5.84, 419] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF853ULZ.bed.gz | 192.78 KB | ef59d91fda3a04ee8ec5f91c4bfd85ec |
| ENCFF853ULZ.bed.gz.dvc | 100.0 B | aecfc585d29395bc56b22a8f485df038 |
| ENCFF853ULZ.tabix.bed.gz | 143.7 KB | 87276e30337fa5f3d0d10ba7dff7e667 |
| ENCFF853ULZ.tabix.bed.gz.dvc | 106.0 B | 026ac487ca730ecaf93a3a448745fc9b |
| ENCFF853ULZ.tabix.bed.gz.tbi | 81.45 KB | 724bdddd87c0c7076c26bc061fc046e0 |
| ENCFF853ULZ.tabix.bed.gz.tbi.dvc | 109.0 B | d7227bf13dc64ecf6229daa4d4e877ab |
| genomic_resource.yaml | 2.6 KB | e59284134dc6f609b74a0b81c443d082 |
| genomic_resource_original.yaml | 2.5 KB | aaa1ff7279cc7de1dba7bfb62d75ede3 |
| statistics/ |