| Id: | TF_ChIP-seq/ENCSR940EZR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR940EZR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B" and target="ZNF280B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN333PUA|/analyses/ENCAN333PUA/} has in progress subobject document {6ec395fd-2a08-4e1b-b918-9a51ecf2d483|/documents/6ec395fd-2a08-4e1b-b918-9a51ecf2d483/} audit_internal_action: Released analysis {ENCAN333PUA|/analyses/ENCAN333PUA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305QDI|/files/ENCFF305QDI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305QDI|/files/ENCFF305QDI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.03. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF644GCK|/files/ENCFF644GCK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF644GCK|/files/ENCFF644GCK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.24. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF428HNJ|/files/ENCFF428HNJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.19 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF084BYB|/files/ENCFF084BYB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.19 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR940EZR | float |
TF_ChIP-seq_ENCSR940EZR |
TF_ChIP-seq ENCSR940EZR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B" and target="ZNF280B"]
|
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[15.1, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF428HNJ.bed.gz | 280.18 KB | 45a376cd4e6a5d2d61a6a46e424a8721 |
| ENCFF428HNJ.bed.gz.dvc | 100.0 B | 25bf126ed72ce0b5b22191b6a0fa336b |
| ENCFF428HNJ.tabix.bed.gz | 210.45 KB | e1b71b8ed9c573a19ddf74aa4f31ad4f |
| ENCFF428HNJ.tabix.bed.gz.dvc | 106.0 B | 32c500d4d9b9e086884030e683954539 |
| ENCFF428HNJ.tabix.bed.gz.tbi | 94.08 KB | 383b8ace15537f719abc5931f6acc64e |
| ENCFF428HNJ.tabix.bed.gz.tbi.dvc | 109.0 B | a93270a2e50b97c9fec17475a7f67feb |
| genomic_resource.yaml | 5.5 KB | c222b0e7cb325e5256beb444a4bc3bc2 |
| genomic_resource_original.yaml | 5.33 KB | 725c1d7a597205c62d5d56b4512227d5 |
| statistics/ |