TF_ChIP-seq_ENCSR939CDD
TF_ChIP-seq ENCSR939CDD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B" and target="ARID4B"]
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| Id: | TF_ChIP-seq/ENCSR939CDD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR939CDD [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B" and target="ARID4B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN381RTY|/analyses/ENCAN381RTY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF103GBM|/files/ENCFF103GBM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF103GBM|/files/ENCFF103GBM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.82. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF041EBZ|/files/ENCFF041EBZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF041EBZ|/files/ENCFF041EBZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR939CDD | float |
TF_ChIP-seq_ENCSR939CDD |
TF_ChIP-seq ENCSR939CDD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B" and target="ARID4B"]
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[12.3, 651] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF086FAZ.bed.gz | 331.66 KB | 5c32882156ff9a8d1042cf91c0d37de0 |
| ENCFF086FAZ.bed.gz.dvc | 100.0 B | 2988a1a6653d5b6763840cf07f83b3d6 |
| ENCFF086FAZ.tabix.bed.gz | 280.05 KB | 2476a17d96915bbca04e4a9435d689e0 |
| ENCFF086FAZ.tabix.bed.gz.dvc | 106.0 B | 9f6dc08bc950e27341906d6673fa3fce |
| ENCFF086FAZ.tabix.bed.gz.tbi | 95.7 KB | a4cf2854d7e6a926c761a85ea6365f74 |
| ENCFF086FAZ.tabix.bed.gz.tbi.dvc | 109.0 B | c037aca70f9132813e4ded98a891ad01 |
| genomic_resource.yaml | 4.24 KB | b668d6577d3dbd07af7b59a588dd13d8 |
| genomic_resource_original.yaml | 4.07 KB | 3902fc3b541c32a9cd855cad63b3cca5 |
| statistics/ |