TF_ChIP-seq_ENCSR938VRO
TF_ChIP-seq ENCSR938VRO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343" and target="ZNF343"]
×
| Id: | TF_ChIP-seq/ENCSR938VRO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR938VRO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343" and target="ZNF343"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN977UNA|/analyses/ENCAN977UNA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN977UNA|/analyses/ENCAN977UNA/} has in progress subobject document {0b1cffe5-8d1a-46bb-b75a-0be8e32f7758|/documents/0b1cffe5-8d1a-46bb-b75a-0be8e32f7758/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF774NTN|/files/ENCFF774NTN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF774NTN|/files/ENCFF774NTN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.26. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF248BTP|/files/ENCFF248BTP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF248BTP|/files/ENCFF248BTP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.47. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR938VRO | float |
TF_ChIP-seq_ENCSR938VRO |
TF_ChIP-seq ENCSR938VRO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343" and target="ZNF343"]
|
|
[10.9, 492] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF415YWK.bed.gz | 242.96 KB | 7f43cdb362f2ba6209dd812946abf250 |
| ENCFF415YWK.bed.gz.dvc | 100.0 B | e2868eea9e3896d285c39ec480764ba3 |
| ENCFF415YWK.tabix.bed.gz | 197.18 KB | 9c7822a150bbe789dd04295784fe3740 |
| ENCFF415YWK.tabix.bed.gz.dvc | 106.0 B | 88539cfcafc159c2f8a6f0e68873566a |
| ENCFF415YWK.tabix.bed.gz.tbi | 81.46 KB | 41e30ab693b3888835e41f0a243734f5 |
| ENCFF415YWK.tabix.bed.gz.tbi.dvc | 109.0 B | 0b13c64b955536bf8127faeeb4785772 |
| genomic_resource.yaml | 4.45 KB | 4e925d2c4ad701155f9d0e09b4f1d84b |
| genomic_resource_original.yaml | 4.29 KB | f63f2b3c9d3ca1a2a8e401ad5c256a43 |
| statistics/ |