TF_ChIP-seq_ENCSR935PEA
TF_ChIP-seq ENCSR935PEA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CREB5" and target="CREB5"]
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| Id: | TF_ChIP-seq/ENCSR935PEA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR935PEA [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CREB5" and target="CREB5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CREB5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN743GOU|/analyses/ENCAN743GOU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN743GOU|/analyses/ENCAN743GOU/} has in progress subobject document {930b2741-a47a-4c0f-83b9-ba9c8cf358a8|/documents/930b2741-a47a-4c0f-83b9-ba9c8cf358a8/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF421LXF|/files/ENCFF421LXF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF421LXF|/files/ENCFF421LXF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.77. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF193ZIW|/files/ENCFF193ZIW/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF193ZIW|/files/ENCFF193ZIW/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR935PEA | float |
TF_ChIP-seq_ENCSR935PEA |
TF_ChIP-seq ENCSR935PEA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CREB5" and target="CREB5"]
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[14.1, 1.03e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF875JMR.bed.gz | 38.32 KB | 6598d3fec21c9e96563c748d74ea59d6 |
| ENCFF875JMR.bed.gz.dvc | 99.0 B | 54c4f330f396bba74e9981d512a6fd03 |
| ENCFF875JMR.tabix.bed.gz | 25.65 KB | 68d334c96b8b756acdd430193368827d |
| ENCFF875JMR.tabix.bed.gz.dvc | 105.0 B | dc9de46332eeea2a84c0f0780b42c9bd |
| ENCFF875JMR.tabix.bed.gz.tbi | 20.68 KB | 2fe2b648cb3db4c8e4442e5c2091dc47 |
| ENCFF875JMR.tabix.bed.gz.tbi.dvc | 109.0 B | 32c99c504753a37fd74cf37cdc39c365 |
| genomic_resource.yaml | 4.44 KB | cbefa7ee6d3e5184433eb327137a7b43 |
| genomic_resource_original.yaml | 4.28 KB | 99b85c697b4dc541e082e4b83b77510b |
| statistics/ |