TF_ChIP-seq_ENCSR934WOF
TF_ChIP-seq ENCSR934WOF [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"]
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| Id: | TF_ChIP-seq/ENCSR934WOF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR934WOF [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN815FVI|/analyses/ENCAN815FVI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF340JRD|/files/ENCFF340JRD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF340JRD|/files/ENCFF340JRD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.43. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF770HJV|/files/ENCFF770HJV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF770HJV|/files/ENCFF770HJV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR934WOF | float |
TF_ChIP-seq_ENCSR934WOF |
TF_ChIP-seq ENCSR934WOF [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"]
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[9.36, 544] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF464BVI.bed.gz | 325.33 KB | c7b7e1cb9c6d14d86d0582f9f5e9e1de |
| ENCFF464BVI.bed.gz.dvc | 100.0 B | 1aa48f97eeebc87d64cb9500110cf82e |
| ENCFF464BVI.tabix.bed.gz | 240.13 KB | 89b4c610e2984775c9de97a8d7ed0ef9 |
| ENCFF464BVI.tabix.bed.gz.dvc | 106.0 B | c2db299c81ece17a14af4437d9fa24ab |
| ENCFF464BVI.tabix.bed.gz.tbi | 127.75 KB | f1025da8544fe83c25115bace487fb35 |
| ENCFF464BVI.tabix.bed.gz.tbi.dvc | 110.0 B | 106746503d8399ef1eac85af41dfe895 |
| genomic_resource.yaml | 4.23 KB | 19d9523fc2899ecc0fa276ac9b355fcf |
| genomic_resource_original.yaml | 4.07 KB | bab4b75198e2b086ce2e8121d341f334 |
| statistics/ |