TF_ChIP-seq_ENCSR933MHJ
TF_ChIP-seq ENCSR933MHJ [biosample_summary="Homo sapiens A549" and target="KDM5A"]
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| Id: | TF_ChIP-seq/ENCSR933MHJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR933MHJ [biosamplesummary="Homo sapiens A549" and target="KDM5A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN922TNR|/analyses/ENCAN922TNR/} has in progress subobject document {236cb00d-dee9-43d0-9968-e6b01c3640da|/documents/236cb00d-dee9-43d0-9968-e6b01c3640da/} audit_internal_action: Released analysis {ENCAN922TNR|/analyses/ENCAN922TNR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF719YWV|/files/ENCFF719YWV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF719YWV|/files/ENCFF719YWV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR933MHJ | float |
TF_ChIP-seq_ENCSR933MHJ |
TF_ChIP-seq ENCSR933MHJ [biosample_summary="Homo sapiens A549" and target="KDM5A"]
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[7.94, 644] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF702XIF.bed.gz | 93.1 KB | 43f1d436e30c2054591542b023683d2d |
| ENCFF702XIF.bed.gz.dvc | 99.0 B | 7666e88deb37d42f3aabf26c6d8023b1 |
| ENCFF702XIF.tabix.bed.gz | 73.75 KB | cdc29606021a647af5199d0d70f13fc6 |
| ENCFF702XIF.tabix.bed.gz.dvc | 105.0 B | 63a545df6988a1396bd966f2a6d3f7d4 |
| ENCFF702XIF.tabix.bed.gz.tbi | 42.45 KB | 995d2aeff597f511086acf72a14bc46e |
| ENCFF702XIF.tabix.bed.gz.tbi.dvc | 109.0 B | 57e763d1e87af5014c4fc48cf05e1a65 |
| genomic_resource.yaml | 2.87 KB | 8642d0c2745d80bfa11eede6ba771c61 |
| genomic_resource_original.yaml | 2.78 KB | ac6a8b6d7f076a049836e826e8cbe250 |
| statistics/ |