TF_ChIP-seq_ENCSR932ZRD
TF_ChIP-seq ENCSR932ZRD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB38" and target="ZBTB38"]
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| Id: | TF_ChIP-seq/ENCSR932ZRD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR932ZRD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB38" and target="ZBTB38"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB38 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN718IIH|/analyses/ENCAN718IIH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN718IIH|/analyses/ENCAN718IIH/} has in progress subobject document {6a5b37be-71b4-40a9-bd08-b278a5ae5f16|/documents/6a5b37be-71b4-40a9-bd08-b278a5ae5f16/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF218WYU|/files/ENCFF218WYU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF218WYU|/files/ENCFF218WYU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF563WBU|/files/ENCFF563WBU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF563WBU|/files/ENCFF563WBU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR932ZRD | float |
TF_ChIP-seq_ENCSR932ZRD |
TF_ChIP-seq ENCSR932ZRD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB38" and target="ZBTB38"]
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[11.8, 502] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF349OOT.bed.gz | 602.18 KB | 2da3b3f0278175b60668c6f13f440ed1 |
| ENCFF349OOT.bed.gz.dvc | 100.0 B | 94aff7720b388f6f859ec8eb49c9cb83 |
| ENCFF349OOT.tabix.bed.gz | 478.74 KB | 8e3f03d02fb24ee414c9edb5b1de3029 |
| ENCFF349OOT.tabix.bed.gz.dvc | 106.0 B | 6aa450198079b2949d0e6acc09b251e8 |
| ENCFF349OOT.tabix.bed.gz.tbi | 142.08 KB | 45a7138b64eb5ec017c2aa7dc94f0a8f |
| ENCFF349OOT.tabix.bed.gz.tbi.dvc | 110.0 B | fb826bc651781e0f5c230138981dc55d |
| genomic_resource.yaml | 4.45 KB | 97e7d86840ea7609be18e85bf06bc9a1 |
| genomic_resource_original.yaml | 4.29 KB | 5e5e75cccedec828b1a5e0c2979ec382 |
| statistics/ |