TF_ChIP-seq_ENCSR932ZMX
TF_ChIP-seq ENCSR932ZMX [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR932ZMX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR932ZMX [biosamplesummary="Homo sapiens GM23338 originated from GM23248" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF322WKG|/files/ENCFF322WKG/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN757WCV|/analyses/ENCAN757WCV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF102OPY|/files/ENCFF102OPY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16630680 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF703HZB|/files/ENCFF703HZB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18576307 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF102OPY|/files/ENCFF102OPY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF703HZB|/files/ENCFF703HZB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR932ZMX | float |
TF_ChIP-seq_ENCSR932ZMX |
TF_ChIP-seq ENCSR932ZMX [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="CTCF"]
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[3.77, 460] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF322WKG.bed.gz | 1.36 MB | cfb4793b08a86db7181ca5d70b260615 |
| ENCFF322WKG.bed.gz.dvc | 101.0 B | 7f76492a18c13d227f2e43d769a35e63 |
| ENCFF322WKG.tabix.bed.gz | 998.78 KB | f536df9703f7d7f615294d299a7e16e7 |
| ENCFF322WKG.tabix.bed.gz.dvc | 107.0 B | 385e331a40d419a204c6abee7a5035e4 |
| ENCFF322WKG.tabix.bed.gz.tbi | 460.11 KB | e184f98ae60268f25a93bbf36a7acbaa |
| ENCFF322WKG.tabix.bed.gz.tbi.dvc | 110.0 B | 10e9b6866355ec63c87f4a46d72a78ab |
| genomic_resource.yaml | 4.28 KB | 16bacb6253055d2c4ac3846a9f6e6043 |
| genomic_resource_original.yaml | 4.16 KB | e01ebdd2b55a307449ac165f70d294e7 |
| statistics/ |