TF_ChIP-seq_ENCSR931ZOM
TF_ChIP-seq ENCSR931ZOM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451" and target="ZNF451"]
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| Id: | TF_ChIP-seq/ENCSR931ZOM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR931ZOM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451" and target="ZNF451"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN861POD|/analyses/ENCAN861POD/} has in progress subobject document {63688e31-7092-4cfc-bd3b-88014daac1a6|/documents/63688e31-7092-4cfc-bd3b-88014daac1a6/} audit_internal_action: Released analysis {ENCAN861POD|/analyses/ENCAN861POD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF079QJC|/files/ENCFF079QJC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF079QJC|/files/ENCFF079QJC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF670EGW|/files/ENCFF670EGW/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF670EGW|/files/ENCFF670EGW/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.02. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR931ZOM | float |
TF_ChIP-seq_ENCSR931ZOM |
TF_ChIP-seq ENCSR931ZOM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451" and target="ZNF451"]
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[8.05, 424] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF628ZKC.bed.gz | 219.52 KB | b0961626095d16414f8d3aebfbc82d41 |
| ENCFF628ZKC.bed.gz.dvc | 100.0 B | d2d551338579e5d91db0adad7412f704 |
| ENCFF628ZKC.tabix.bed.gz | 180.46 KB | 48b1c20fd9c9d3cf05238deb20ce16ce |
| ENCFF628ZKC.tabix.bed.gz.dvc | 106.0 B | 6c755b8e2ea94ff92628d243c6a03a45 |
| ENCFF628ZKC.tabix.bed.gz.tbi | 80.43 KB | 949728245eddcc1551b1f47767dbf9ec |
| ENCFF628ZKC.tabix.bed.gz.tbi.dvc | 109.0 B | cc4d58330fadf240c7487b07c583ac77 |
| genomic_resource.yaml | 4.45 KB | 779d7a9a8b89b2c1b57b25e88c8af7cb |
| genomic_resource_original.yaml | 4.29 KB | 5312ceaace059ca168e6df10c8c7127e |
| statistics/ |