TF_ChIP-seq_ENCSR931SYA
TF_ChIP-seq ENCSR931SYA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46" and target="ZBTB46"]
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| Id: | TF_ChIP-seq/ENCSR931SYA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR931SYA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46" and target="ZBTB46"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN303LBE|/analyses/ENCAN303LBE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN303LBE|/analyses/ENCAN303LBE/} has in progress subobject document {dabfc0b8-ebb7-4091-8322-d4c948bf2ff0|/documents/dabfc0b8-ebb7-4091-8322-d4c948bf2ff0/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF159VJZ|/files/ENCFF159VJZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF159VJZ|/files/ENCFF159VJZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.83. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF405CZN|/files/ENCFF405CZN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF405CZN|/files/ENCFF405CZN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.30. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF930FAL|/files/ENCFF930FAL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 3.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF806TPY|/files/ENCFF806TPY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 3.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR931SYA | float |
TF_ChIP-seq_ENCSR931SYA |
TF_ChIP-seq ENCSR931SYA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46" and target="ZBTB46"]
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[11, 299] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF930FAL.bed.gz | 99.04 KB | 1b26b4973871868ddbe7d078ae2d2bee |
| ENCFF930FAL.bed.gz.dvc | 100.0 B | 83b24242326bdd8fc77d54c49f329ca0 |
| ENCFF930FAL.tabix.bed.gz | 75.09 KB | fae6c758063cdd3b83a996bbd823eb42 |
| ENCFF930FAL.tabix.bed.gz.dvc | 105.0 B | 16be108df2735deff38543b17c1be278 |
| ENCFF930FAL.tabix.bed.gz.tbi | 39.94 KB | bf31116b72999d8013b5e3026dae5bd3 |
| ENCFF930FAL.tabix.bed.gz.tbi.dvc | 109.0 B | d53283bc1ebb3f89635c20a0f9532ab0 |
| genomic_resource.yaml | 5.49 KB | a9b46fa29c70ad4599ad8129ed88307c |
| genomic_resource_original.yaml | 5.33 KB | cfd80d77003275bef26f4691815901b8 |
| statistics/ |