TF_ChIP-seq_ENCSR929IMB
TF_ChIP-seq ENCSR929IMB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA" and target="AKNA"]
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| Id: | TF_ChIP-seq/ENCSR929IMB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR929IMB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA" and target="AKNA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AKNA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN267CQF|/analyses/ENCAN267CQF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN267CQF|/analyses/ENCAN267CQF/} has in progress subobject document {bff48a5d-1aa5-4cf2-b572-c29196d7e5a5|/documents/bff48a5d-1aa5-4cf2-b572-c29196d7e5a5/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF411GOS|/files/ENCFF411GOS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 3.50. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF446RJQ|/files/ENCFF446RJQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 3.50. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR929IMB | float |
TF_ChIP-seq_ENCSR929IMB |
TF_ChIP-seq ENCSR929IMB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA" and target="AKNA"]
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[9.37, 464] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF411GOS.bed.gz | 72.14 KB | 19c5250279ad6be5d8f7025ff6e51877 |
| ENCFF411GOS.bed.gz.dvc | 99.0 B | 85aeb54c593ae37cb0e6dd1f7a2ee9e6 |
| ENCFF411GOS.tabix.bed.gz | 49.67 KB | 4423c2a4c5c41c3d6efccc96bd3ec9c3 |
| ENCFF411GOS.tabix.bed.gz.dvc | 105.0 B | 9a9e8d7ceed0366202f2b50115582c6f |
| ENCFF411GOS.tabix.bed.gz.tbi | 34.59 KB | b976c978d704b82217b63222ec8e5138 |
| ENCFF411GOS.tabix.bed.gz.tbi.dvc | 109.0 B | f1fdc9fc4a46d72a213d971bf20325ed |
| genomic_resource.yaml | 2.94 KB | 5d7fd3fcebb5617d829ac23a5f15a4f1 |
| genomic_resource_original.yaml | 2.78 KB | 02c1f6614bfabebfd7172e6cc8d35c48 |
| statistics/ |