TF_ChIP-seq_ENCSR928RNP
TF_ChIP-seq ENCSR928RNP [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR928RNP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR928RNP [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN913ZLI|/analyses/ENCAN913ZLI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF620BGN|/files/ENCFF620BGN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF620BGN|/files/ENCFF620BGN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR928RNP | float |
TF_ChIP-seq_ENCSR928RNP |
TF_ChIP-seq ENCSR928RNP [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="CTCF"]
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[4.07, 541] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF226NCM.bed.gz | 945.1 KB | ab9ec6be12e011910265e8a196c40e78 |
| ENCFF226NCM.bed.gz.dvc | 100.0 B | 777323ab4453290c3e5ae5550cb07adb |
| ENCFF226NCM.tabix.bed.gz | 614.64 KB | 7dce0ffc4b1902a4f2eb1f780b87a2dd |
| ENCFF226NCM.tabix.bed.gz.dvc | 106.0 B | 75fc7bd661daea0077923f8cc56ba7ae |
| ENCFF226NCM.tabix.bed.gz.tbi | 295.07 KB | e7280fe661cfe02552513424999d4fa0 |
| ENCFF226NCM.tabix.bed.gz.tbi.dvc | 110.0 B | 9918509523259918a38233a9fbdc9e22 |
| genomic_resource.yaml | 2.76 KB | 050e6c663803cb477e1600839496a656 |
| genomic_resource_original.yaml | 2.63 KB | 9dabfb3f0d95abee6ce3b6f0f5968d59 |
| statistics/ |