TF_ChIP-seq_ENCSR928BPP
TF_ChIP-seq ENCSR928BPP [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2" and target="ATF2"]
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| Id: | TF_ChIP-seq/ENCSR928BPP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR928BPP [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2" and target="ATF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN715JHG|/analyses/ENCAN715JHG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF907DOJ|/files/ENCFF907DOJ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 18682466 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF671PCI|/files/ENCFF671PCI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.15 and a self consistency ratio of 2.68. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR928BPP | float |
TF_ChIP-seq_ENCSR928BPP |
TF_ChIP-seq ENCSR928BPP [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2" and target="ATF2"]
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[7.29, 241] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF671PCI.bed.gz | 24.68 KB | e1c956c909e17b751bceae556caf781b |
| ENCFF671PCI.bed.gz.dvc | 99.0 B | 1fa46b9ab1f2fcb34e752415759b53a8 |
| ENCFF671PCI.tabix.bed.gz | 17.04 KB | 8dd7b911177e1f72a7aef20d4228f619 |
| ENCFF671PCI.tabix.bed.gz.dvc | 105.0 B | 055c5da870168ffb1d6fbad2eba35eac |
| ENCFF671PCI.tabix.bed.gz.tbi | 17.25 KB | 3800ff00f599e49596552b865828dfc5 |
| ENCFF671PCI.tabix.bed.gz.tbi.dvc | 109.0 B | b9a0a7d12526c797bcac80904ec46f9b |
| genomic_resource.yaml | 2.69 KB | 9c529bc75cad4d71d8aedffd29ef339a |
| genomic_resource_original.yaml | 2.53 KB | fd15c1b0e4f56f8ee00cd01e4d729def |
| statistics/ |