TF_ChIP-seq_ENCSR926TAH
TF_ChIP-seq ENCSR926TAH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PREB" and target="PREB"]
×
| Id: | TF_ChIP-seq/ENCSR926TAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR926TAH [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PREB" and target="PREB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PREB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN556VRM|/analyses/ENCAN556VRM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF982QMP|/files/ENCFF982QMP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF982QMP|/files/ENCFF982QMP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.54. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF604RLO|/files/ENCFF604RLO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF604RLO|/files/ENCFF604RLO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.25. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR926TAH | float |
TF_ChIP-seq_ENCSR926TAH |
TF_ChIP-seq ENCSR926TAH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PREB" and target="PREB"]
|
|
[12.6, 216] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF927VIS.bed.gz | 80.87 KB | 434ce1966dc29e12377038f781357783 |
| ENCFF927VIS.bed.gz.dvc | 99.0 B | 45a355d99992934e354df901bb3e8f94 |
| ENCFF927VIS.tabix.bed.gz | 57.04 KB | 6181c02e52f3aca46bcbedf69a9b20de |
| ENCFF927VIS.tabix.bed.gz.dvc | 105.0 B | 8f2d73d26a6d8053356dd93c9e7a6181 |
| ENCFF927VIS.tabix.bed.gz.tbi | 35.7 KB | cda92a373ab20617592fd6655ef439db |
| ENCFF927VIS.tabix.bed.gz.tbi.dvc | 109.0 B | c9de78f88d87ff8fcc2a9881fb178254 |
| genomic_resource.yaml | 4.22 KB | 11830cd986ee9ca6d5a09698279a99d9 |
| genomic_resource_original.yaml | 4.06 KB | b2679f69a8a1d39635ac253dc9710abc |
| statistics/ |