TF_ChIP-seq_ENCSR925GDS
TF_ChIP-seq ENCSR925GDS [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR925GDS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR925GDS [biosamplesummary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN927FAX|/analyses/ENCAN927FAX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF034SMD|/files/ENCFF034SMD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF034SMD|/files/ENCFF034SMD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR925GDS | float |
TF_ChIP-seq_ENCSR925GDS |
TF_ChIP-seq ENCSR925GDS [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="CTCF"]
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[10.2, 650] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF230HWI.bed.gz | 278.42 KB | d81233d03fbdee0425933ede6e8ca42b |
| ENCFF230HWI.bed.gz.dvc | 100.0 B | 31749af82830930380572f46f2c13e96 |
| ENCFF230HWI.tabix.bed.gz | 203.89 KB | 51dde8bfc268cd582242fc264326ab26 |
| ENCFF230HWI.tabix.bed.gz.dvc | 106.0 B | 77cc34a76953508b30e5c34cdc325970 |
| ENCFF230HWI.tabix.bed.gz.tbi | 128.45 KB | 4b3a89e47ad2ba646fc37d6b5ca7ea6c |
| ENCFF230HWI.tabix.bed.gz.tbi.dvc | 110.0 B | db542e453ef6346457140518673eb851 |
| genomic_resource.yaml | 2.83 KB | cfea62e3bca2be0f0ffb0cf40270359c |
| genomic_resource_original.yaml | 2.7 KB | 91cab5c77de69e31956fd036a783f7c8 |
| statistics/ |