TF_ChIP-seq_ENCSR924KZA
TF_ChIP-seq ENCSR924KZA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF235" and target="ZNF235"]
×
| Id: | TF_ChIP-seq/ENCSR924KZA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR924KZA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF235" and target="ZNF235"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF235 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN687CMD|/analyses/ENCAN687CMD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF378NPD|/files/ENCFF378NPD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF378NPD|/files/ENCFF378NPD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF823TDH|/files/ENCFF823TDH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF823TDH|/files/ENCFF823TDH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.75. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF321MWB|/files/ENCFF321MWB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.29 and a self consistency ratio of 3.31. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR924KZA | float |
TF_ChIP-seq_ENCSR924KZA |
TF_ChIP-seq ENCSR924KZA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF235" and target="ZNF235"]
|
|
[9.45, 484] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF321MWB.bed.gz | 182.67 KB | 443f27247ce808d8236aefa2b039d6c4 |
| ENCFF321MWB.bed.gz.dvc | 100.0 B | a9d82e4ddac3ba404e14d25d795bb25a |
| ENCFF321MWB.tabix.bed.gz | 142.59 KB | 282ec4b0b32401e7ba536e9b34ec867f |
| ENCFF321MWB.tabix.bed.gz.dvc | 106.0 B | 4374eaf427273b846c45cc12068a1575 |
| ENCFF321MWB.tabix.bed.gz.tbi | 64.06 KB | 51253446ed18a9e0f95a0ff137f925d9 |
| ENCFF321MWB.tabix.bed.gz.tbi.dvc | 109.0 B | 1f0a45e913f73130c8c3378b7bd0abf7 |
| genomic_resource.yaml | 4.76 KB | d64779b4131a64616003b23d2a9773c1 |
| genomic_resource_original.yaml | 4.59 KB | b5bca51f903444a52774529baa7428d8 |
| statistics/ |