TF_ChIP-seq_ENCSR924JOW
TF_ChIP-seq ENCSR924JOW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7" and target="KAT7"]
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| Id: | TF_ChIP-seq/ENCSR924JOW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR924JOW [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7" and target="KAT7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens KAT7 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN123TPY|/analyses/ENCAN123TPY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF597USB|/files/ENCFF597USB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF597USB|/files/ENCFF597USB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.96. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465VOL|/files/ENCFF465VOL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465VOL|/files/ENCFF465VOL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.08. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF555IKI|/files/ENCFF555IKI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.53 and a self consistency ratio of 3.89. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR924JOW | float |
TF_ChIP-seq_ENCSR924JOW |
TF_ChIP-seq ENCSR924JOW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7" and target="KAT7"]
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[11.2, 323] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF555IKI.bed.gz | 266.95 KB | 86d79f9c2d1f369de2e5bea3db48176b |
| ENCFF555IKI.bed.gz.dvc | 100.0 B | 64f302dd159d380882848ed0ff39535a |
| ENCFF555IKI.tabix.bed.gz | 215.08 KB | 951cca5766f97081cbdea6a3b06b82f3 |
| ENCFF555IKI.tabix.bed.gz.dvc | 106.0 B | 71c28e20c87b10cb425105fc00761f8e |
| ENCFF555IKI.tabix.bed.gz.tbi | 75.68 KB | 3ebd5f99ddd2bfa3c5bd80f737b28187 |
| ENCFF555IKI.tabix.bed.gz.tbi.dvc | 109.0 B | f4d4dd578f856f094df720d3147e51b4 |
| genomic_resource.yaml | 4.74 KB | c49e7996d4de85cc0a0dd0306b4eceb3 |
| genomic_resource_original.yaml | 4.58 KB | 4396d93aa8ddafa0fedeb50e8bb82265 |
| statistics/ |