TF_ChIP-seq_ENCSR923MOO
TF_ChIP-seq ENCSR923MOO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2D" and target="MEF2D"]
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| Id: | TF_ChIP-seq/ENCSR923MOO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR923MOO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2D" and target="MEF2D"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MEF2D output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN884LQZ|/analyses/ENCAN884LQZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN884LQZ|/analyses/ENCAN884LQZ/} has in progress subobject document {48265773-755f-4361-8b4d-200cdfa2693e|/documents/48265773-755f-4361-8b4d-200cdfa2693e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF335JEA|/files/ENCFF335JEA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF335JEA|/files/ENCFF335JEA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.11. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF570AGY|/files/ENCFF570AGY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF570AGY|/files/ENCFF570AGY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.31. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR923MOO | float |
TF_ChIP-seq_ENCSR923MOO |
TF_ChIP-seq ENCSR923MOO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2D" and target="MEF2D"]
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[12, 760] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF407WPM.bed.gz | 400.87 KB | e0bb1d24b603eda40fb738e24cb289c2 |
| ENCFF407WPM.bed.gz.dvc | 100.0 B | e1a896db8d1dc3bc30eb3e5899bf2915 |
| ENCFF407WPM.tabix.bed.gz | 317.01 KB | 654bd7b57384f22c9a81c1f39fbe8a73 |
| ENCFF407WPM.tabix.bed.gz.dvc | 106.0 B | 7ed2e57d1efa4f590141f3bbe46426b8 |
| ENCFF407WPM.tabix.bed.gz.tbi | 124.82 KB | 6d0db711228cab0c5fb096e3667d2e4c |
| ENCFF407WPM.tabix.bed.gz.tbi.dvc | 110.0 B | e0afd9176c2b9659bd17bec7660b298c |
| genomic_resource.yaml | 4.44 KB | c6e9689a7a05f01c4970d335964e5f63 |
| genomic_resource_original.yaml | 4.28 KB | 3327cc6f66d119f0c5a1a0105e3f6d8d |
| statistics/ |