TF_ChIP-seq_ENCSR922MQU
TF_ChIP-seq ENCSR922MQU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP1" and target="FUBP1"]
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| Id: | TF_ChIP-seq/ENCSR922MQU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR922MQU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP1" and target="FUBP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FUBP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN602PSA|/analyses/ENCAN602PSA/} has in progress subobject document {8b4e9fb7-eea4-4acd-bef9-f0f9713f8941|/documents/8b4e9fb7-eea4-4acd-bef9-f0f9713f8941/} audit_internal_action: Released analysis {ENCAN602PSA|/analyses/ENCAN602PSA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF221NMO|/files/ENCFF221NMO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF221NMO|/files/ENCFF221NMO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF363FIA|/files/ENCFF363FIA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.86. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF139XIZ|/files/ENCFF139XIZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.62 and a self consistency ratio of 6.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF316FMQ|/files/ENCFF316FMQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.62 and a self consistency ratio of 6.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR922MQU | float |
TF_ChIP-seq_ENCSR922MQU |
TF_ChIP-seq ENCSR922MQU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP1" and target="FUBP1"]
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[10, 155] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF139XIZ.bed.gz | 84.52 KB | ff39202c1f48de4f69919f989283e9f6 |
| ENCFF139XIZ.bed.gz.dvc | 99.0 B | 0e9c268f89b363dd9f81742929bfff42 |
| ENCFF139XIZ.tabix.bed.gz | 59.76 KB | 522820900caeb1fbdf73516f5bd9b871 |
| ENCFF139XIZ.tabix.bed.gz.dvc | 105.0 B | 48bb794bdfd77dcb8f147fc8c9620afa |
| ENCFF139XIZ.tabix.bed.gz.tbi | 35.38 KB | 19fd7143e3fe5e3ce4b1e641d90cfe08 |
| ENCFF139XIZ.tabix.bed.gz.tbi.dvc | 109.0 B | 67ce721ed504c2260470a879ff15bf48 |
| genomic_resource.yaml | 4.84 KB | 4db889e895b840546be011dbf6cf17b0 |
| genomic_resource_original.yaml | 4.68 KB | 97590819795fc6257dbe0345d60a29de |
| statistics/ |