TF_ChIP-seq_ENCSR917SSX
TF_ChIP-seq ENCSR917SSX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF160" and target="ZNF160"]
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| Id: | TF_ChIP-seq/ENCSR917SSX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR917SSX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF160" and target="ZNF160"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF160 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN602DLQ|/analyses/ENCAN602DLQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: File {ENCFF294DQQ|/files/ENCFF294DQQ/} with status 'released' is derived from file {ENCFF399LFU|/files/ENCFF399LFU/} with status 'in progress'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF563GNZ|/files/ENCFF563GNZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF563GNZ|/files/ENCFF563GNZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF614LKM|/files/ENCFF614LKM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF614LKM|/files/ENCFF614LKM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR917SSX | float |
TF_ChIP-seq_ENCSR917SSX |
TF_ChIP-seq ENCSR917SSX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF160" and target="ZNF160"]
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[7.93, 572] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF294DQQ.bed.gz | 222.68 KB | d484f6181ed5f474fe6d319a5bdc37bb |
| ENCFF294DQQ.bed.gz.dvc | 100.0 B | 632639513a022b37b176a5805a705fee |
| ENCFF294DQQ.tabix.bed.gz | 177.68 KB | 1b0302254680f7023816fce7193700cc |
| ENCFF294DQQ.tabix.bed.gz.dvc | 106.0 B | 97c62cc5e33927268ef0682d313e7f36 |
| ENCFF294DQQ.tabix.bed.gz.tbi | 87.02 KB | 3730e30b3c4123b9053ca2f36918d4a6 |
| ENCFF294DQQ.tabix.bed.gz.tbi.dvc | 109.0 B | 449abbfe943f49c94a23fba27c3d0334 |
| genomic_resource.yaml | 4.42 KB | 86aece3ce63a59cfeec91d37a95117ee |
| genomic_resource_original.yaml | 4.26 KB | f4c5a775b292c6f2c812b02aef2fcb2b |
| statistics/ |