TF_ChIP-seq_ENCSR917QNE
TF_ChIP-seq ENCSR917QNE [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="RAD21"]
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| Id: | TF_ChIP-seq/ENCSR917QNE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR917QNE [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN565SRB|/analyses/ENCAN565SRB/} has in progress subobject document {c1e71f51-5f6f-4ba5-a3c7-147892ce5bd0|/documents/c1e71f51-5f6f-4ba5-a3c7-147892ce5bd0/} audit_internal_action: Released analysis {ENCAN565SRB|/analyses/ENCAN565SRB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF633IIG|/files/ENCFF633IIG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF633IIG|/files/ENCFF633IIG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.16. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF920QFB|/files/ENCFF920QFB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF920QFB|/files/ENCFF920QFB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.66. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR917QNE | float |
TF_ChIP-seq_ENCSR917QNE |
TF_ChIP-seq ENCSR917QNE [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="RAD21"]
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[11.5, 871] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF893YQZ.bed.gz | 1.06 MB | 9660709c9568a6812266e477098e412b |
| ENCFF893YQZ.bed.gz.dvc | 101.0 B | 55b825f2ed8887d9a53a0937f35d5b00 |
| ENCFF893YQZ.tabix.bed.gz | 792.77 KB | 54e0307cb88ea4d37c68d37e2594df4c |
| ENCFF893YQZ.tabix.bed.gz.dvc | 106.0 B | 297b3bafeb7b0fa5aac4f945722a503e |
| ENCFF893YQZ.tabix.bed.gz.tbi | 345.1 KB | abff21206d4f9ad91bdd1096b39854ac |
| ENCFF893YQZ.tabix.bed.gz.tbi.dvc | 110.0 B | 52985ebe56a6887cbd95bcc99ffaf045 |
| genomic_resource.yaml | 4.43 KB | 46c34f7aeb7434128c02ccbb24b9c686 |
| genomic_resource_original.yaml | 4.26 KB | ceac2ab1910c858010eab650c88d1b9a |
| statistics/ |