TF_ChIP-seq_ENCSR914NEI
TF_ChIP-seq ENCSR914NEI [biosample_summary="Homo sapiens K562" and target="MTA3"]
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| Id: | TF_ChIP-seq/ENCSR914NEI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR914NEI [biosamplesummary="Homo sapiens K562" and target="MTA3"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN462VOP|/analyses/ENCAN462VOP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF067NIX|/files/ENCFF067NIX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF067NIX|/files/ENCFF067NIX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF256EDM|/files/ENCFF256EDM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF256EDM|/files/ENCFF256EDM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR914NEI | float |
TF_ChIP-seq_ENCSR914NEI |
TF_ChIP-seq ENCSR914NEI [biosample_summary="Homo sapiens K562" and target="MTA3"]
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[14.8, 2.06e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF350YXB.bed.gz | 515.69 KB | 3ea3ef0e96deacc4e08f7eb62dbcdac3 |
| ENCFF350YXB.bed.gz.dvc | 100.0 B | 5a29809d3fbfe1b634dbe573107772fa |
| ENCFF350YXB.tabix.bed.gz | 390.63 KB | 97d5d92d0112b21bef3a5e37815f4c80 |
| ENCFF350YXB.tabix.bed.gz.dvc | 106.0 B | 6c625259d750e986d413a9e29055d067 |
| ENCFF350YXB.tabix.bed.gz.tbi | 143.65 KB | c6e218851e937d94a48c92f3f3f0e14d |
| ENCFF350YXB.tabix.bed.gz.tbi.dvc | 110.0 B | 328608d98520284ee291020e9d49a33f |
| genomic_resource.yaml | 3.93 KB | 2e92adc022bab0d32e216218b8aff100 |
| genomic_resource_original.yaml | 3.84 KB | 4fbee77e7503e3831c1fa4e3ebbc6837 |
| statistics/ |