TF_ChIP-seq_ENCSR914HPP
TF_ChIP-seq ENCSR914HPP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44" and target="ZNF44"]
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| Id: | TF_ChIP-seq/ENCSR914HPP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR914HPP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44" and target="ZNF44"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN306BLZ|/analyses/ENCAN306BLZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN306BLZ|/analyses/ENCAN306BLZ/} has in progress subobject document {6a620bfd-f31b-44a6-b156-5b5439c14c5c|/documents/6a620bfd-f31b-44a6-b156-5b5439c14c5c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF617XVI|/files/ENCFF617XVI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF617XVI|/files/ENCFF617XVI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF829HMF|/files/ENCFF829HMF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF829HMF|/files/ENCFF829HMF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.10. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR914HPP | float |
TF_ChIP-seq_ENCSR914HPP |
TF_ChIP-seq ENCSR914HPP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44" and target="ZNF44"]
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[12, 424] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF624TVT.bed.gz | 183.85 KB | eee79ef1b5d745e4a6825521b52ceb3b |
| ENCFF624TVT.bed.gz.dvc | 100.0 B | f9fbad69a4b438b4286d08444279c574 |
| ENCFF624TVT.tabix.bed.gz | 135.69 KB | 732137f01b19b87c798a801cf7161ed5 |
| ENCFF624TVT.tabix.bed.gz.dvc | 106.0 B | 9ef7c72788dd306d7567862429137cc4 |
| ENCFF624TVT.tabix.bed.gz.tbi | 67.0 KB | 38f0f351f5b4e173ef3f40a0d887a92e |
| ENCFF624TVT.tabix.bed.gz.tbi.dvc | 109.0 B | 7a056ab060349760e95f8aaac0a87e7a |
| genomic_resource.yaml | 4.44 KB | 7038da0dff00239de6e1cfa0c6f40716 |
| genomic_resource_original.yaml | 4.28 KB | 41e9c393068b9b5c825a678d8e659fc5 |
| statistics/ |